Table 1 Genes with different methylation status after stimulation with SEB
Methylation status | Location | Gene | Chr | Likelihood | Ensemble accession | Methylation score TCM | Methylation score SEB |
|---|---|---|---|---|---|---|---|
Hypermethylation | Promoter | CTSLL2 | 10 | 0.599515 | ENSG00000224036 | 1 | 7 |
Y_RNA | 6 | 0.595036 | ENSG00000201555 | 1 | 8 | ||
AC022026.3 | 10 | 0.589686 | ENSG00000213731 | 0 | 6 | ||
Intron | CHD5 | 1 | 0.887026 | ENSG00000116254 | 0 | 8 | |
STAB2 | 12 | 0.644866 | ENSG00000136011 | 1 | 8 | ||
ROBO1 | 3 | 0.53597 | ENSG00000169855 | 0 | 5 | ||
AJAP1 | 1 | 0.512208 | ENSG00000196581 | 1 | 6 | ||
TTLL1 | 22 | 0.4962 | ENSG00000100271 | 0 | 4 | ||
GLT1D1 | 12 | 0.472979 | ENSG00000151948 | 1 | 8 | ||
MAD1L1 | 7 | 0.47049 | ENSG00000002822 | 0 | 5 | ||
HEATR5B | 2 | 0.4673 | ENSG00000008869 | 0 | 4 | ||
LGMN | 14 | 0.459486 | ENSG00000100600 | 0 | 5 | ||
FAM59A | 18 | 0.458542 | ENSG00000141441 | 0 | 4 | ||
STAT5B | 17 | 0.458148 | ENSG00000173757 | 0 | 5 | ||
NKD1 | 16 | 0.457063 | ENSG00000140807 | 1 | 7 | ||
SLC25A24 | 1 | 0.431776 | ENSG00000085491 | 1 | 7 | ||
AC073343.1 | 7 | 0.430122 | ENSG00000228010 | 1 | 6 | ||
TMEM138 | 11 | 0.412654 | ENSG00000149483 | 1 | 6 | ||
MPRIP | 17 | 0.411674 | ENSG00000133030 | 1 | 7 | ||
GAA | 17 | 0.40881 | ENSG00000171298 | 1 | 8 | ||
RFX3 | 9 | 0.407894 | ENSG00000080298 | 1 | 6 | ||
Exon | ADAMTS16 | 5 | 0.552893 | ENSG00000145536 | 1 | 10 | |
IKBKB | 8 | 0.533067 | ENSG00000104365 | 1 | 7 | ||
ZNF541 | 19 | 0.513317 | ENSG00000118156 | 1 | 8 | ||
KANK2 | 19 | 0.495541 | ENSG00000197256 | 0 | 5 | ||
CYBA | 16 | 0.484142 | ENSG00000051523 | 0 | 4 | ||
UBE2I | 16 | 0.471502 | ENSG00000103275 | 1 | 6 | ||
OLFM1 | 9 | 0.446344 | ENSG00000130558 | 1 | 7 | ||
MARK2 | 11 | 0.438781 | ENSG00000072518 | 1 | 7 | ||
CORO7 | 16 | 0.434694 | ENSG00000103426 | 1 | 6 | ||
KCNQ2 | 20 | 0.428704 | ENSG00000075043 | 1 | 8 | ||
ASAP1 | 8 | 0.414992 | ENSG00000153317 | 1 | 6 | ||
NOC2L | 1 | 0.412654 | ENSG00000188976 | 1 | 6 | ||
Hypomethylation | Intron | POLR3E | 16 | 0.647331 | ENSG00000058600 | 4 | 0 |
VPS13B | 8 | 0.576756 | ENSG00000132549 | 4 | 0 | ||
ANKRD13A | 12 | 0.520639 | ENSG00000076513 | 4 | 0 | ||
ZBTB20 | 3 | 0.491524 | ENSG00000181722 | 4 | 0 | ||
AC087393.2 | 17 | 0.44588 | ENSG00000233098 | 5 | 1 | ||
ZDHHC1 | 16 | 0.440425 | ENSG00000159714 | 3 | 0 | ||
PDZD2 | 5 | 0.440425 | ENSG00000133401 | 3 | 0 | ||
DLGAP2 | 8 | 0.423913 | ENSG00000198010 | 5 | 1 | ||
NDST1 | 5 | 0.405485 | ENSG00000070614 | 3 | 0 | ||
Exon | AC016907.1 | 2 | 0.493142 | ENSG00000233862 | 3 | 0 |