Ownby DR, Johnson CC, Peterson EL: Exposure to dogs and cats in the first year of life and risk of allergic sensitization at 6 to 7 years of age. JAMA. 2002, 288: 963-972. 10.1001/jama.288.8.963.
Article
PubMed
Google Scholar
Hesselmar B, Aberg N, Aberg B, Eriksson B, Bjorksten B: Does early exposure to cat or dog protect against later allergy development?. Clin Exp Allergy. 1999, 29: 611-617. 10.1046/j.1365-2222.1999.00534.x.
Article
CAS
PubMed
Google Scholar
Litonjua AA, Milton DK, Celedon JC, Ryan L, Weiss ST, Gold DR: A longitudinal analysis of wheezing in young children: the independent effects of early life exposure to house dust endotoxin, allergens, and pets. J Allergy Clin Immunol. 2002, 110: 736-742. 10.1067/mai.2002.128948.
Article
PubMed
Google Scholar
Ball TM, Castro-Rodriguez JA, Griffith KA, Holberg CJ, Martinez FD, Wright AL: Siblings, day-care attendance, and the risk of asthma and wheezing during childhood. N Engl J Med. 2000, 343: 538-543. 10.1056/NEJM200008243430803.
Article
CAS
PubMed
Google Scholar
Strachan DP: Hay fever, hygiene, and household size. BMJ. 1989, 299: 1259-1260. 10.1136/bmj.299.6710.1259.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wold AE: The hygiene hypothesis revised: is the rising frequency of allergy due to changes in the intestinal flora?. Allergy. 1998, 53: 20-25.
Article
CAS
PubMed
Google Scholar
Abrahamsson TR, Jakobsson HE, Andersson AF, Bjorksten B, Engstrand L, Jenmalm MC: Low diversity of the gut microbiota in infants with atopic eczema. J Allergy Clin Immunol. 2012, 129: 434-440. 10.1016/j.jaci.2011.10.025. 440
Article
PubMed
Google Scholar
Kalliomaki M, Kirjavainen P, Eerola E, Kero P, Salminen S, Isolauri E: Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing. J Allergy Clin Immunol. 2001, 107: 129-134. 10.1067/mai.2001.111237.
Article
CAS
PubMed
Google Scholar
Vebo HC, Sekelja M, Nestestog R, Storro O, Johnsen R, Oien T: Temporal development of the infant gut microbiota in IgE sensitized and non-sensitized children determined by the GA-map infant array. Clin Vaccine Immunol. 2011, 18: 1326-1335. 10.1128/CVI.00062-11.
Article
PubMed Central
PubMed
Google Scholar
Bisgaard H, Li N, Bonnelykke K, Chawes BL, Skov T, Paludan-Muller G: Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. J Allergy Clin Immunol. 2011, 128: 646-652. 10.1016/j.jaci.2011.04.060.
Article
PubMed
Google Scholar
Nakayama J, Kobayashi T, Tanaka S, Korenori Y, Tateyama A, Sakamoto N: Aberrant structures of fecal bacterial community in allergic infants profiled by 16S rRNA gene pyrosequencing. FEMS Immunol Med Microbiol. 2011, 63: 397-406. 10.1111/j.1574-695X.2011.00872.x.
Article
CAS
PubMed
Google Scholar
Penders J, Thijs C, van den Brandt PA, Kummeling I, Snijders B, Stelma F: Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study. Gut. 2007, 56: 661-667. 10.1136/gut.2006.100164.
Article
PubMed Central
CAS
PubMed
Google Scholar
Vael C, Vanheirstraeten L, Desager KN, Goossens H: Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma. BMC Microbiol. 2011, 11: 68. 10.1186/1471-2180-11-68.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mulder IE, Schmidt B, Stokes CR, Lewis M, Bailey M, Aminov RI: Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biol. 2009, 7: 79. 10.1186/1741-7007-7-79.
Article
PubMed Central
PubMed
Google Scholar
Dicksved J, Floistrup H, Bergstrom A, Rosenquist M, Pershagen G, Scheynius A: Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles. Appl Environ Microbiol. 2007, 73: 2284-2289. 10.1128/AEM.02223-06.
Article
PubMed Central
CAS
PubMed
Google Scholar
van Nimwegen FA, Penders J, Stobberingh EE, Postma DS, Koppelman GH, Kerkhof M: Mode and place of delivery, gastrointestinal microbiota, and their influence on asthma and atopy. J Allergy Clin Immunol. 2011, 128: 948-955. 10.1016/j.jaci.2011.07.027.
Article
PubMed
Google Scholar
Bjorksten B, Sepp E, Julge K, Voor T, Mikelsaar M: Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol. 2001, 108: 516-520. 10.1067/mai.2001.118130.
Article
CAS
PubMed
Google Scholar
Johansson MA, Sjogren YM, Persson JO, Nilsson C, Sverremark-Ekstrom E: Early colonization with a group of Lactobacilli decreases the risk for allergy at five years of age despite allergic heredity. PLoS One. 2011, 6: e23031. 10.1371/journal.pone.0023031.
Article
PubMed Central
CAS
PubMed
Google Scholar
Murray CS, Tannock GW, Simon MA, Harmsen HJ, Welling GW, Custovic A: Fecal microbiota in sensitized wheezy and non-sensitized non-wheezy children: a nested case–control study. Clin Exp Allergy. 2005, 35: 741-745. 10.1111/j.1365-2222.2005.02259.x.
Article
CAS
PubMed
Google Scholar
Lodrup Carlsen KC, Roll S, Carlsen KH, Mowinckel P, Wijga AH, Brunekreef B: Does pet ownership in infancy lead to asthma or allergy at school age? Pooled analysis of individual participant data from 11 European birth cohorts. PLoS One. 2012, 7: e43214. 10.1371/journal.pone.0043214.
Article
PubMed Central
PubMed
Google Scholar
Koplin JJ, Dharmage SC, Ponsonby AL, Tang ML, Lowe AJ, Gurrin LC: Environmental and demographic risk factors for egg allergy in a population-based study of infants. Allergy. 2012, 67: 1415-1422. 10.1111/all.12015.
Article
CAS
PubMed
Google Scholar
Adlerberth I, Strachan DP, Matricardi PM, Ahrne S, Orfei L, Aberg N: Gut microbiota and development of atopic eczema in 3 European birth cohorts. J Allergy Clin Immunol. 2007, 120: 343-350. 10.1016/j.jaci.2007.05.018.
Article
CAS
PubMed
Google Scholar
Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I: Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics. 2006, 118: 511-521. 10.1542/peds.2005-2824.
Article
PubMed
Google Scholar
Ariefdjohan MW, Savaiano DA, Nakatsu CH: Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens. Nutr J. 2010, 9: 23. 10.1186/1475-2891-9-23.
Article
PubMed Central
PubMed
Google Scholar
Maughan H, Wang PW, Diaz CJ, Fung P, Gong Y, Donaldson SL: Analysis of the cystic fibrosis lung microbiota via serial illumina sequencing of bacterial 16S rRNA hypervariable regions. PLoS One. 2012, 7: e45791. 10.1371/journal.pone.0045791.
Article
PubMed Central
CAS
PubMed
Google Scholar
Edgar RC: Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010, 26: 2460-2461. 10.1093/bioinformatics/btq461.
Article
CAS
PubMed
Google Scholar
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J: SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007, 35: 7188-7196. 10.1093/nar/gkm864.
Article
PubMed Central
CAS
PubMed
Google Scholar
Colwell RK: Biodiversity: Concepts, Patterns, and Measurement. 2009, Princeton University Press. The Princeton Guide to Ecology, 257-263.
Google Scholar
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK: QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010, 7: 335-336. 10.1038/nmeth.f.303.
Article
PubMed Central
CAS
PubMed
Google Scholar
Damborg P, Nielsen SS, Guardabassi L: Escherichia coli shedding patterns in humans and dogs: insights into within-household transmission of phylotypes associated with urinary tract infections. Epidemiol Infect. 2009, 137: 1457-1464. 10.1017/S095026880900226X.
Article
CAS
PubMed
Google Scholar
Johnson JR, Clabots C, Kuskowski MA: Multiple-host sharing, long-term persistence, and virulence of Escherichia coli clones from human and animal household members. J Clin Microbiol. 2008, 46: 4078-4082. 10.1128/JCM.00980-08.
Article
PubMed Central
PubMed
Google Scholar
Stokholm J, Schjorring S, Pedersen L, Bischoff AL, Folsgaard N, Carson CG: Living with cat and dog increases vaginal colonization with E. Coli in pregnant women. PLoS One. 2012, 7: e46226. 10.1371/journal.pone.0046226.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ahrne S, Lonnermark E, Wold AE, Aberg N, Hesselmar B, Saalman R: Lactobacilli in the intestinal microbiota of Swedish infants. Microbes Infect. 2005, 7: 1256-1262. 10.1016/j.micinf.2005.04.011.
Article
PubMed
Google Scholar
Nowrouzian F, Hesselmar B, Saalman R, Strannegard IL, Aberg N, Wold AE: Escherichia coli in infants' intestinal microflora: colonization rate, strain turnover, and virulence gene carriage. Pediatr Res. 2003, 54: 8-14. 10.1203/01.PDR.0000069843.20655.EE.
Article
CAS
PubMed
Google Scholar
Lindberg E, Adlerberth I, Matricardi P, Bonanno C, Tripodi S, Panetta V: Effect of lifestyle factors on Staphylococcus aureus gut colonization in Swedish and Italian infants. Clin Microbiol Infect. 2011, 17: 1209-1215. 10.1111/j.1469-0691.2010.03426.x.
Article
CAS
PubMed
Google Scholar
Thum C, Cookson AL, Otter DE, McNabb WC, Hodgkinson AJ, Dyer J: Can nutritional modulation of maternal intestinal microbiota influence the development of the infant gastrointestinal tract?. J Nutr. 2012, 142: 1921-1928. 10.3945/jn.112.166231.
Article
CAS
PubMed
Google Scholar
Konya T: Is house dust a reservoir for infant gut bacteria?. 2012, Dalla Lana School of Public Health, University of Toronto: Masters in Public Health
Google Scholar
Nylund L, Satokari R, Nikkila J, Rajili-Stojanovi M, Kalliomaki M, Isolauri E: Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease. BMC Microbiol. 2013, 13: 12. 10.1186/1471-2180-13-12.
Article
PubMed Central
PubMed
Google Scholar
Ley RE, Peterson DA, Gordon JI: Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006, 124: 837-848. 10.1016/j.cell.2006.02.017.
Article
CAS
PubMed
Google Scholar
Minamoto Y, Hooda S, Swanson KS, Suchodolski JS: Feline gastrointestinal microbiota. Anim Health Res Rev. 2012, 13: 64-77. 10.1017/S1466252312000060.
Article
PubMed
Google Scholar
Dewhirst FE, Klein EA, Thompson EC, Blanton JM, Chen T, Milella L: The canine oral microbiome. PLoS One. 2012, 7: e36067. 10.1371/journal.pone.0036067.
Article
PubMed Central
CAS
PubMed
Google Scholar
Weese JS: The canine and feline skin microbiome in health and disease. Vet Dermatol. 2013, 24: 137-145. 10.1111/j.1365-3164.2012.01076.x.
Article
PubMed
Google Scholar
Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R: Microbial biogeography of public restroom surfaces. PLoS One. 2011, 6: e28132. 10.1371/journal.pone.0028132.
Article
PubMed Central
CAS
PubMed
Google Scholar
Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG: Bayesian community-wide culture-independent microbial source tracking. Nat Methods. 2011, 8: 761-763. 10.1038/nmeth.1650.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bowers RM, Sullivan AP, Costello EK, Collett JL, Knight R, Fierer N: Sources of bacteria in outdoor air across cities in the Midwestern United States. Appl Environ Microbiol. 2011, 77: 6350-6356. 10.1128/AEM.05498-11.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bezirtzoglou E, Tsiotsias A, Welling GW: Microbiota profile in feces of breast- and formula-fed newborns by using Fluorescence In situ Hybridization (FISH). Anaerobe. 2011, 17: 478-482. 10.1016/j.anaerobe.2011.03.009.
Article
PubMed
Google Scholar
Harmsen HJ, Wildeboer-Veloo AC, Raangs GC, Wagendorp AA, Klijn N, Bindels JG: Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. J Pediatr Gastroenterol Nutr. 2000, 30: 61-67. 10.1097/00005176-200001000-00019.
Article
CAS
PubMed
Google Scholar
Hong PY, Lee BW, Aw M, Shek LP, Yap GC, Chua KY: Comparative analysis of fecal microbiota in infants with and without eczema. PLoS One. 2010, 5: e9964. 10.1371/journal.pone.0009964.
Article
PubMed Central
PubMed
Google Scholar
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO: Development of the human infant intestinal microbiota. PLoS Biol. 2007, 5: e177. 10.1371/journal.pbio.0050177.
Article
PubMed Central
PubMed
Google Scholar
Roger LC, Costabile A, Holland DT, Hoyles L, McCartney AL: Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life. Microbiology. 2010, 156: 3329-3341. 10.1099/mic.0.043224-0.
Article
CAS
PubMed
Google Scholar
Stark PL, Lee A: The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. J Med Microbiol. 1982, 15: 189-203. 10.1099/00222615-15-2-189.
Article
CAS
PubMed
Google Scholar
Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ: Diversity of Bifidobacteria within the Infant Gut Microbiota. PLoS One. 2012, 7: e36957. 10.1371/journal.pone.0036957.
Article
PubMed Central
CAS
PubMed
Google Scholar
Azad MB, Kozyrskyj AL: Perinatal programming of asthma: the role of gut microbiota. Clin Dev Immunol. 2012, 201 (2): 932072.
Google Scholar
Azad MB, Konya T, Maughan H, Guttman DS, Field CJ, Chari RS: Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months. CMAJ. 2013, 185 (5): 385-394. 10.1503/cmaj.121189.
Article
PubMed Central
PubMed
Google Scholar